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1

Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes

Beaulaurier, John, Zhang, Xue-Song, Zhu, Shijia, Sebra, Robert, Rosenbluh, Chaggai, Deikus, Gintaras, Shen, Nan, Munera, Diana, Waldor, Matthew K., Chess, Andrew, Blaser, Martin J., Schadt, Eric E., F

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 1008 KB

english, 2015

2

Vibrio spp. infections

Baker-Austin, Craig, Oliver, James D., Alam, Munirul, Ali, Afsar, Waldor, Matthew K., Qadri, Firdausi, Martinez-Urtaza, Jaime

Journal:

Nature Reviews Disease Primers

Year:

2018

Language:

english

File:

PDF, 3.44 MB

english, 2018

3

Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow

Wozniak, Rachel A. F., Waldor, Matthew K.

Journal:

Nature Reviews Microbiology

Year:

2010

Language:

english

File:

PDF, 470 KB

english, 2010

4

Phage regulatory circuits and virulence gene expression

Matthew K Waldor, David I Friedman

Journal:

Current Opinion in Microbiology

Year:

2005

Language:

english

File:

PDF, 155 KB

english, 2005

5

Critical role for a promoter discriminator in RpoS control of virulence in Edwardsiella piscicida

Yin, Kaiyu, Guan, Yunpeng, Ma, Ruiqing, Wei, Lifan, Liu, Bing, Liu, Xiaohong, Zhou, Xiangshan, Ma, Yue, Zhang, Yuanxing, Waldor, Matthew K., Wang, Qiyao, Coombes, Brian K.

Journal:

Year:

2018

Language:

english

File:

PDF, 7.88 MB

english, 2018

6

Anaerobic nitrate reduction divergently governs population expansion of the enteropathogen Vibrio cholerae

Bueno, Emilio, Sit, Brandon, Waldor, Matthew K., Cava, Felipe

Journal:

Nature Microbiology

Year:

2018

Language:

english

File:

PDF, 2.25 MB

english, 2018

7

Unsupervised Learning Approach for Comparing Multiple Transposon Insertion Sequencing Studies

Hubbard, Troy P., D’Gama, Jonathan D., Billings, Gabriel, Davis, Brigid M., Waldor, Matthew K., Imperiale, Michael J.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.21 MB

english, 2019

8

Oral immunization with a probiotic cholera vaccine induces broad protective immunity against Vibrio cholerae colonization and disease in mice

Sit, Brandon, Zhang, Ting, Fakoya, Bolutife, Akter, Aklima, Biswas, Rajib, Ryan, Edward T., Waldor, Matthew K., Roskosky, Mellisa

Journal:

PLoS Neglected Tropical Diseases

Year:

2019

Language:

english

File:

PDF, 5.40 MB

english, 2019

9

Regulation, replication, and integration functions of the Vibrio cholerae CTXφ are encoded by region RS2

Matthew K. Waldor, Eric J. Rubin, Gregory D. N. Pearson, Harvey Kimsey, John J. Mekalanos

Journal:

Molecular Microbiology

Year:

1997

Language:

english

File:

PDF, 564 KB

english, 1997

10

Replication and integration of a Vibrio cholerae cryptic plasmid linked to the CTX prophage

Eric J. Rubin, Wei Lin, John J. Mekalanos, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

1998

Language:

english

File:

PDF, 558 KB

english, 1998

11

Site-specific integration of the conjugal Vibrio cholerae SXT element into prfC

Bianca Hochhut, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

1999

Language:

english

File:

PDF, 451 KB

english, 1999

12

Evidence for a rolling-circle mechanism of phage DNA synthesis from both replicative and integrated forms of CTXφ

Kathryn E. Moyer, Harvey H. Kimsey, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2001

Language:

english

File:

PDF, 1.95 MB

english, 2001

13

Bacteriophage control of Shiga toxin 1 production and release by Escherichia coli

Patrick L. Wagner, Jonathan Livny, Melody N. Neely, David W. K. Acheson, David I. Friedman, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2002

Language:

english

File:

PDF, 1021 KB

english, 2002

14

Emerging knowledge of regulatory roles ofd-amino acids in bacteria

Felipe Cava, Hubert Lam, Miguel A. de Pedro, Matthew K. Waldor

Journal:

Cellular and Molecular Life Sciences

Year:

2011

Language:

english

File:

PDF, 652 KB

english, 2011

15

Morphological and physical characterization of the capsular layer of Vibrio cholerae O139

Y. Meno, Matthew K. Waldor, John J. Mekalanos, Kazunobu Amako

Journal:

Archives of Microbiology

Year:

1998

Language:

english

File:

PDF, 357 KB

english, 1998

16

Hfq is essential for Vibrio cholerae virulence and downregulates σE expression

Yanpeng Ding, Brigid M. Davis, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2004

Language:

english

File:

PDF, 148 KB

english, 2004

17

Distinct segregation dynamics of the two Vibrio cholerae chromosomes

Michael A. Fogel, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2005

Language:

english

File:

PDF, 745 KB

english, 2005

18

MicroReview: Divided genomes: negotiating the cell cycle in prokaryotes with multiple chromosomes

Elizabeth S. Egan, Michael A. Fogel, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2005

Language:

english

File:

PDF, 179 KB

english, 2005

19

CTXφ and Vibrio cholerae: exploring a newly recognized type of phage–host cell relationship

Sarah M. McLeod, Harvey H. Kimsey, Brigid M. Davis, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2005

Language:

english

File:

PDF, 428 KB

english, 2005

20

Antimicrobial peptides activate the Vibrio choleraeσE regulon through an OmpU-dependent signalling pathway

Jyoti Mathur, Brigid M. Davis, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 404 KB

english, 2007

21

RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA

Brigid M. Davis, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 342 KB

english, 2007

22

Hfq negatively regulates type III secretion in EHEC and several other pathogens

Elizabeth A. Shakhnovich, Brigid M. Davis, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2009

Language:

english

File:

PDF, 563 KB

english, 2009

23

Mobilizable genomic islands: going mobile with oriT mimicry

Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2010

Language:

english

File:

PDF, 165 KB

english, 2010

24

Virulence of an emerging pathogenic lineage of Vibrio nigripulchritudo is dependent on two plasmids

Frédérique Le Roux, Yannick Labreuche, Brigid M. Davis, Naeem Iqbal, Sophie Mangenot, Cyrille Goarant, Didier Mazel, Matthew K. Waldor

Journal:

Environmental Microbiology

Year:

2011

Language:

english

File:

PDF, 420 KB

english, 2011

25

EspFU, a type III-translocated effector of actin assembly, fosters epithelial association and late-stage intestinal colonization by E. coli O157:H7

Jennifer M. Ritchie, Michael J. Brady, Kathleen N. Riley, Theresa Deland Ho, Kenneth G. Campellone, Ira M. Herman, Arthur Donohue-Rolfe, Saul Tzipori, Matthew K. Waldor, John M. Leong

Journal:

Cellular Microbiology

Year:

2008

Language:

english

File:

PDF, 530 KB

english, 2008

26

Cholera: molecular basis for emergence and pathogenesis

John J. Mekalanos, Eric J. Rubin, Matthew K. Waldor

Journal:

FEMS Immunology & Medical Microbiology

Year:

1997

Language:

english

File:

PDF, 532 KB

english, 1997

27

10.1038/35020178

Waldor, Matthew K., RayChaudhuri, Debabrata

Journal:

Year:

2000

Language:

english

File:

PDF, 124 KB

english, 2000

28

Filamentous phage integration requires the host recombinases XerC and XerD

Huber, Kathryn E., Waldor, Matthew K.

Journal:

Year:

2002

Language:

english

File:

PDF, 354 KB

english, 2002

29

SOS response promotes horizontal dissemination of antibiotic resistance genes

Beaber, John W., Hochhut, Bianca, Waldor, Matthew K.

Journal:

Year:

2003

Language:

english

File:

PDF, 200 KB

english, 2003

30

Characterization of XerC- and XerD-dependent CTX phage integration in Vibrio cholerae

Sarah M. McLeod, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2004

Language:

english

File:

PDF, 489 KB

english, 2004

31

Synchronous replication initiation of the two Vibrio cholerae chromosomes

Elizabeth S Egan, Anders Løbner-Olesen, Matthew K Waldor

Journal:

Current Biology

Year:

2004

Language:

english

File:

PDF, 224 KB

english, 2004

32

The current ICE age: Biology and evolution of SXT-related integrating conjugative elements

Vincent Burrus, Joeli Marrero, Matthew K. Waldor

Journal:

Year:

2006

Language:

english

File:

PDF, 601 KB

english, 2006

33

Cholera: molecular basis for emergence and pathogenesis

John J. Mekalanos, Eric J. Rubin, Matthew K. Waldor

Journal:

FEMS Immunology & Medical Microbiology

Year:

1997

Language:

english

File:

PDF, 900 KB

english, 1997

34

RNA-Seq-Based Monitoring of Infection-Linked Changes in Vibrio cholerae Gene Expression

Anjali Mandlik, Jonathan Livny, William P. Robins, Jennifer M. Ritchie, John J. Mekalanos, Matthew K. Waldor

Journal:

Cell Host & Microbe

Year:

2011

Language:

english

File:

PDF, 1.23 MB

english, 2011

35

Interactions between Inner Membrane Proteins in Donor and Recipient Cells Limit Conjugal DNA Transfer

Joeli Marrero, Matthew K. Waldor

Journal:

Developmental Cell

Year:

2005

Language:

english

File:

PDF, 300 KB

english, 2005

36

Identification of small RNAs in diverse bacterial species

Jonathan Livny, Matthew K Waldor

Journal:

Current Opinion in Microbiology

Year:

2007

Language:

english

File:

PDF, 316 KB

english, 2007

37

LexA Cleavage Is Required for CTX Prophage Induction

Mariam Quinones, Harvey H. Kimsey, Matthew K. Waldor

Journal:

Year:

2005

Language:

english

File:

PDF, 384 KB

english, 2005

38

Shaping bacterial genomes with integrative and conjugative elements

Vincent Burrus, Matthew K Waldor

Journal:

Research in Microbiology

Year:

2004

Language:

english

File:

PDF, 446 KB

english, 2004

39

Regulation and Temporal Expression Patterns of Vibrio cholerae Virulence Genes during Infection

Sang Ho Lee, David L Hava, Matthew K Waldor, Andrew Camilli

Journal:

Year:

1999

Language:

english

File:

PDF, 242 KB

english, 1999

40

Distinct Replication Requirements for the Two Vibrio cholerae Chromosomes

Elizabeth S. Egan, Matthew K. Waldor

Journal:

Year:

2003

Language:

english

File:

PDF, 364 KB

english, 2003

41

Diverse CTXΦs and evolution of new pathogenic Vibrio cholerae

Harvey H Kimsey, G Balakrish Nair, Amit Ghosh, Matthew K Waldor

Journal:

Year:

1998

Language:

english

File:

PDF, 30 KB

english, 1998

42

Bacteriophage biology and bacterial virulence

Matthew K Waldor

Journal:

Trends in Microbiology

Year:

1998

Language:

english

File:

PDF, 122 KB

english, 1998

43

Host–microbe interactions: bacteria Microbes and their hosts: mutual interactions

Matthew K. Waldor, Arturo Zychlinsky

Journal:

Current Opinion in Microbiology

Year:

2002

Language:

english

File:

PDF, 48 KB

english, 2002

44

Filamentous phages linked to virulence of Vibrio cholerae

Brigid M Davis, Matthew K Waldor

Journal:

Current Opinion in Microbiology

Year:

2003

Language:

english

File:

PDF, 262 KB

english, 2003

45

Quinolone Antibiotics Induce Shiga Toxin–Encoding Bacteriophages, Toxin Production, and Death in Mice

Zhang, Xiaoping, McDaniel, Aaron D., Wolf, Lucas E., Keusch, Gerald T., Waldor, Matthew K., Acheson, David W. K.

Journal:

The Journal of Infectious Diseases

Year:

2000

Language:

english

File:

PDF, 137 KB

english, 2000

46

Fucose sensing regulates bacterial intestinal colonization

Pacheco, Alline R., Curtis, Meredith M., Ritchie, Jennifer M., Munera, Diana, Waldor, Matthew K., Moreira, Cristiano G., Sperandio, Vanessa

Journal:

Year:

2012

Language:

english

File:

PDF, 519 KB

english, 2012

47

Therapy of Autoimmune Diseases with Antibody to Immune Response Gene Products or to T-Cell Surface Markers

LAWRENCE STEINMAN, MATTHEW K. WALDOR, SCOTT S. ZAMVIL, MAE LIM, LEANORE HERZENBERG, LEONARD HERZENBERG, HUGH O. McDEVITT, DENNIS MITCHELL, SUBRAMANIAM SRIRAM

Journal:

Annals of the New York Academy of Sciences

Year:

1986

Language:

english

File:

PDF, 623 KB

english, 1986

48

Treatment of Experimental Autoimmune Myasthenia Gravis with Monoclonal Antibodies to Immune Response Gene Products

MATTHEW K. WALDOR, MARY O'HEARN, SUBRAMANIAN SRIRAM, LAWRENCE STEINMAN

Journal:

Annals of the New York Academy of Sciences

Year:

1987

Language:

english

File:

PDF, 746 KB

english, 1987

49

Horizontal Gene Transfer: Linking Sex and Cell Fate

Davis, Brigid M., Waldor, Matthew K.

Journal:

Current Biology

Year:

2013

Language:

english

File:

PDF, 475 KB

english, 2013

50

Entering the era of bacterial epigenomics with single molecule real time DNA sequencing

Davis, Brigid M, Chao, Michael C, Waldor, Matthew K

Journal:

Current Opinion in Microbiology

Year:

2013

Language:

english

File:

PDF, 470 KB

english, 2013

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